| Executive Inn Woodbury | 8030 Jericho Turnpike, Woodbury | $95 - 150 |
| Harrison Manor House Hotel | Dosoris Lane, Glen Cove | $120 - 690 |
| Hilton Huntington-long Island Hotel | 598 Broadhollow Rd, Melville | $150 - 340 |
| Holiday Inn Ronkonkoma | 3845 Veterans Memorial Hwy, Ronkonkoma | $99 - 300 |
| Howard Johnson Hotel | 450 Moreland Road, Commack | $96 - 179 |
| Howard Johnson Westbury Hotel | 120 Jericho Turnpike, Jericho | $120 - 188 |
| Radisson Macarthur Airport Hotel | 1730 North Ocean Avenue, Holtsville | $110 - 179 |
| A Butlers Manor B&b Hotel | 244 North Main Street, Southampton | $150 - 225 |
| Bw East End Hotel | 1830 Route 25, Riverhead | $109 - 169 |
| Coeur Des Vignes Hotel | 57225 Main Rd, Southold | $200 - 200 |
| Comfort Inn Medford | 2695 Route 112, Medford | $80 - 259 |
| Econo Lodge Macarthur Arpt | 3055 Veterans Memorial Hwy, Ronkonkoma | $68 - 92 |
| Econo Lodge Smithtown | 755 Sr 347, Smithtown | $76 - 134 |
| Hampton Inn L I Islandia | 1600 Veterans Memorial Hwy, Islandia | $107 - 149 |
| Hampton Inn Li Commack | 680 Commack Rd, Commack | $110 - 160 |
| Hilton Garden Inn Islip | 3485 Veterans Memorial Highway, Ronkonkoma | $98 - 154 |
| Holiday Inn Exp Stony Brook | 3131 Nesconset Hwy, Stony Brook | $125 - 359 |
| Holiday Inn Express Hauppauge | 2050 Express Dr South, Hauppauge | $118 - 139 |
| Inn At East Wind | 5720 Route 25a, Wading River | $159 - 230 |
| Montauk Yacht Club Hotel | 32 Star Island Road, Montauk | $79 - 109 |
Popular hotels nearby Bay Shore:
